CDS

Accession Number TCMCG017C22837
gbkey CDS
Protein Id OMO77441.1
Location complement(join(31501..31588,31694..31738,32274..32509,32989..33123,33389..33445,33591..33729,33915..34156,34557..34652,34777..34845,35187..35411))
GeneID InterPro:IPR010655
Organism Corchorus olitorius
locus_tag COLO4_25181

Protein

Length 443aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01018935.1
Definition Pre-mRNA cleavage complex II Clp1 [Corchorus olitorius]
Locus_tag COLO4_25181

EGGNOG-MAPPER Annotation

COG_category A
Description Required for endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3'-end formation
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K14399        [VIEW IN KEGG]
EC 2.7.1.78        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03015        [VIEW IN KEGG]
map03015        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000394        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006378        [VIEW IN EMBL-EBI]
GO:0006379        [VIEW IN EMBL-EBI]
GO:0006388        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006399        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006793        [VIEW IN EMBL-EBI]
GO:0006796        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008033        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009908        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010228        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016301        [VIEW IN EMBL-EBI]
GO:0016310        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016772        [VIEW IN EMBL-EBI]
GO:0016773        [VIEW IN EMBL-EBI]
GO:0019205        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0031123        [VIEW IN EMBL-EBI]
GO:0031124        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043631        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048367        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048827        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0051731        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090567        [VIEW IN EMBL-EBI]
GO:0099402        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCGTATGGCGTTGCAACCATGACGGCGCCCACGGCGGTGAGTGGCTCTGCCTCAGGGTCGATGATAAAGCAAGTGAAGTTAGAGAGAGAGAGCGAGCTAAGAATCGAGGTGGATAATGAAACACCACTAAAGCTCCGTCTCCTTAACGGCTCAGCCGAGATTTTTGGGTCCGAATTGGCCCCTGAGATTTGGCTCACTTTCCCTCCTCGCCTCAAATTTGCTGTTTTCACTTGGTACGGAGCTACACTTGAGATGGATGGCGCTACTGAAACTGATTATACAGCAGATGAGACACCTATGGTCAGTTATGTCAATGTACATGCTGTATTAGAAGGACGAAGAAACCGTGCTAAAGCTTCATCATCTAACGATTCTGAGGCATCCCAGGGACCCAGGGTGATTGTTGTGGGCCCTACAGATTCTGGAAAGAGCACGTTATCAAGGATGCTTCTTAGTTGGGCAGCTAAACAAGGTTGGAAACCTACCTGTGTAGATTTGGATATTGGGCAAGGATCTATAACAGTTCCTGGATGTATTGCTGCTACCCCTATTGAGATGCCCATTGATCCAGTGGAAGGAATTCCTCTTGAGATGCCTCTTGTTTACTTTTATGGCCATACAACTCCTAGTAATAATGTAGATTTATATAAAGCGCTTGTGAATGAGCTTGCCCAACTGCTGGAGACTCAATTTGCTCGTAATGCTGAGTCACGAGCTGCGGGCATGGTAATCAATACCATGGGTTGGATAGAGGGTACAGGCTATGAGTTGCTTCTCCATGCAATTGATACATTCAAAGCCAATGTTGTCTTGGTTTTGGGTCAGGAAAAACTTTTTAGCATGCTCAAGGCTGTAGCAAAAAGTAAGCCGAATGTGGATGTTGTGAAACTTCAGAAGTCAGGGGGTGTTGTATCCAGGAATGCGAAATTCCGTCAGAAGGCTAGGGGTTATAAGATAAGGGAGTACTTTTATGGCCTTGCAAATGATCTTTCCCCGCATTCTAATATTGCAAACTTTAGTGATCTGCTTGTCTATCGAATTGGTGGCGGTCCCCAGGCCCCAAGATCAGCTCTGCCAATTGGTGCGGATCCTGTTGCTAACCCTTTAAGAGTAACACCTGTAAATATTGACCGGGATTTGCTTCATATGGTTCTTGCTGTTTCATATGCCAAGGAGCCTGACCAAATTTTGTCAAGTAATGTTGCTGGGTTCATTTACGTAACCGACATTGATATTCAGAGGAAAAAAATTACTTACCTTGCACCATCTGCTGGGGATCTACCAAGCAAGTATCTGATTATGGGAACTGTGACATGGCTTGAGACTTGA
Protein:  
MSYGVATMTAPTAVSGSASGSMIKQVKLERESELRIEVDNETPLKLRLLNGSAEIFGSELAPEIWLTFPPRLKFAVFTWYGATLEMDGATETDYTADETPMVSYVNVHAVLEGRRNRAKASSSNDSEASQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTCVDLDIGQGSITVPGCIAATPIEMPIDPVEGIPLEMPLVYFYGHTTPSNNVDLYKALVNELAQLLETQFARNAESRAAGMVINTMGWIEGTGYELLLHAIDTFKANVVLVLGQEKLFSMLKAVAKSKPNVDVVKLQKSGGVVSRNAKFRQKARGYKIREYFYGLANDLSPHSNIANFSDLLVYRIGGGPQAPRSALPIGADPVANPLRVTPVNIDRDLLHMVLAVSYAKEPDQILSSNVAGFIYVTDIDIQRKKITYLAPSAGDLPSKYLIMGTVTWLET